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Expert Interview

Slingshot members are talking to an expert! The topic is:

Looking at the potential of Google's AI variant effect predictor, AlphaMissense which can predicts the chances that tens of millions of genetic variants will cause disease

Ticker(s): GOOG

Who's the expert?

Institution: University of Colorado

  • Director, Adult Medical Genetics Program & Associate Director, Colorado Center for Personalized Medicine.
  • Directs clinical trials for rare diseases, directs international registry of >100 patients with Danon Disease; site PI for Rocket Pharmaceuticals Gene Therapy trial.
  • Research laboratory focuses on the genetic basis of heritable cardiac disease where he deploys NextGen DNA sequencing, RNASeq, bioinformatics, along with cell-based and animal-based disease modeling.

Interview Questions
Q1.

Describe your background and research setting

Added By: ben_admin
Q2.

Review your usage of current variant effect predictors

Added By: ben_admin
Q3.

What is your opinion on the potential of Google's AlphaMissense AI predictor?

Added By: ben_admin
Q4.

Can you give a bit of background and your opinion on the use of variant effect predictors like SIFT, GERP, PolyPhen, and Google's AlphaMissense?

Added By: slingshot_insights
Q5.

Are the variant effect prediction programs usually made by academic institutions or companies like Google?

Added By: max_admin
Q6.

What does Google's AlphaMissense add to the existing variant effect prediction softwares?

Added By: slingshot_insights
Q7.

Does AlphaMissense focus only on Missense variants? Is it not suitable for other types of mutations like deletions or frame shifts?

Added By: slingshot_insights
Q8.

Was Google's AlphaFold released a few years ago, and is AlphaMissense a more recent development?

Added By: slingshot_insights
Q9.

How user-friendly are these variant effect prediction softwares? Is there a lot of training or support provided?

Added By: slingshot_insights
Q10.

Are these softwares open access and free, or do researchers have to pay to use them?

Added By: slingshot_insights
Q11.

Are there any other technologies in this space that you're interested in or think are worth exploring?

Added By: slingshot_insights

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